The Civil Aviation Safety Authority (CASA) said it had found evidence of "emerging problems" in maintenance procedures at Qantas and said the airline failed to meet some of its self-imposed standards.
But it said it had no doubt that Qantas was a safe airline, and there was no evidence of system failures in maintenance or engineering at the carrier.
"CASA wants Qantas to make a range of improvements to the way it manages and delivers aircraft maintenance," it said in a statement.
The "Flying Kangaroo" has been embarrassed by a series of recent incidents, the most serious a mid-air blast caused by an exploding oxygen bottle that blew a hole in the fuselage of a jet bound for Australia in July.
Days later, a Qantas airliner was forced to return to Adelaide after a landing gear door failed to retract. In August, another Qantas jet was forced to return to Sydney shortly after take off when the pilot detected a hydraulic leak in the wing.
On Sunday, the airline diverted a London-bound plane to Frankfurt after the pilot noticed an unusual vibration in one engine.
CASA's deputy chief executive officer of operations Mick Quinn said these incidents were unrelated, and that there had been no increase in the rate of safety incidents.
"We believe these are random events, the sort of events that would happen on any airline, on any given day, in any part of the world," he said.
But he said CASA had "looked carefully at the Qantas maintenance systems and performance and uncovered signs of emerging problems."
"The review found maintenance performance within Qantas is showing some adverse trends and is now below the airline's own benchmarks."
Qantas chief executive Geoff Dixon said the airline would work closely with CASA, which two months ago renewed the airline's operators certificate for another three years, to implement any recommendations contained in its review.
He said some of Qantas' recent delays had been the result of industrial action, adding that the airline's policy of safety before schedule was "sacrosanct".
"These issues are not about safety or compliance and we are working to bring our network performance back to the standards which have earned us a reputation as one of the best and most reliable airlines in the world," he said.
Transport Minister Anthony Albanese said CASA will carry out two additional audits of some Qantas planes and records, as well as review overall maintenance operations.
"This ongoing action sends a signal to the aviation industry and to the travelling public that CASA and Qantas are very serious about maintaining Australia's high safety standards," Albanese said.
AFP